| Item Type | Name |
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Concept
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Bacterial Proteins
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Concept
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Blood Protein Electrophoresis
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Concept
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DNA-Binding Proteins
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Concept
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Microtubule-Associated Proteins
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Concept
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High Mobility Group Proteins
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Concept
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Membrane Proteins
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Concept
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Protein Denaturation
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Concept
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Protein-Tyrosine Kinases
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Concept
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Protein Binding
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Concept
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Protein Conformation
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Concept
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Protein Processing, Post-Translational
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Concept
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Proto-Oncogene Proteins
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Concept
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Proteins
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Concept
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Protein Kinases
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Concept
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Protein Engineering
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Concept
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Protein Structure, Quaternary
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Concept
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Protein Subunits
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Concept
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Proto-Oncogene Proteins c-abl
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Concept
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Protein Structure, Tertiary
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Concept
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Protein Transport
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Concept
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Protein Structure, Secondary
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Concept
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Protein Folding
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Concept
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Recombinant Proteins
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Concept
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Viral Envelope Proteins
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Concept
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Protein Multimerization
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Concept
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Viral Proteins
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Concept
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Cation Transport Proteins
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Concept
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Escherichia coli Proteins
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Concept
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Proto-Oncogene Proteins c-hck
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Concept
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Protein Stability
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Concept
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Carrier Proteins
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Concept
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Nuclear Proteins
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Concept
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Membrane Transport Proteins
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Concept
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Protein Kinase Inhibitors
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Concept
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p38 Mitogen-Activated Protein Kinases
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Academic Article
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The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data.
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Academic Article
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Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer.
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Academic Article
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Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.
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Academic Article
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Influence of the membrane potential on the free energy of an intrinsic protein.
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Academic Article
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Valence selectivity of the gramicidin channel: a molecular dynamics free energy perturbation study.
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Academic Article
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The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.
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Academic Article
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Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin.
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Academic Article
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Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study.
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Academic Article
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High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints.
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Academic Article
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Lipid-mediated interactions between intrinsic membrane proteins: a theoretical study based on integral equations.
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Academic Article
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Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane.
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Academic Article
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Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation.
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Academic Article
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Energetics of ion conduction through the K+ channel.
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Academic Article
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Ion transport in a model gramicidin channel. Structure and thermodynamics.
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Academic Article
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A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels.
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Academic Article
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Ion channels, permeation, and electrostatics: insight into the function of KcsA.
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Academic Article
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Anchoring of a monotopic membrane protein: the binding of prostaglandin H2 synthase-1 to the surface of a phospholipid bilayer.
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Academic Article
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Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.
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Academic Article
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Lipid-mediated interactions between intrinsic membrane proteins: dependence on protein size and lipid composition.
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Academic Article
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Extracellular blockade of K(+) channels by TEA: results from molecular dynamics simulations of the KcsA channel.
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Academic Article
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What can be deduced about the structure of Shaker from available data?
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Academic Article
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Local deformations revealed by dynamics simulations of DNA polymerase Beta with DNA mismatches at the primer terminus.
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Academic Article
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Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields.
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Academic Article
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Dissecting the coupling between the voltage sensor and pore domains.
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Academic Article
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Lonely arginine seeks friendly environment.
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Academic Article
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On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation.
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Academic Article
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CHARMM: the biomolecular simulation program.
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Academic Article
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Nanosculpting reversed wavelength sensitivity into a photoswitchable iGluR.
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Academic Article
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Using Markov models to simulate electron spin resonance spectra from molecular dynamics trajectories.
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Academic Article
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The normal modes of the gramicidin-A dimer channel.
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Academic Article
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Multi-ion distributions in the cytoplasmic domain of inward rectifier potassium channels.
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Academic Article
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Functional interactions in bacteriorhodopsin: a theoretical analysis of retinal hydrogen bonding with water.
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Academic Article
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Biogenesis of the pore architecture of a voltage-gated potassium channel.
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Academic Article
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Optimized atomic radii for protein continuum electrostatics solvation forces.
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Academic Article
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Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer.
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Academic Article
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A molecular dynamics study of gating in dioxolane-linked gramicidin A channels.
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Academic Article
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Perspectives on: molecular dynamics and computational methods.
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Academic Article
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Nano-positioning system for structural analysis of functional homomeric proteins in multiple conformations.
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Academic Article
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Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study.
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Academic Article
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Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data.
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Academic Article
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Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer.
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Academic Article
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Ouabain binding site in a functioning Na+/K+ ATPase.
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Academic Article
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Molecular dynamics simulations of the gramicidin channel.
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Academic Article
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Intrinsic tryptophan fluorescence of Schizosaccharomyces pombe mitochondrial F1-ATPase. A powerful probe for phosphate and nucleotide interactions.
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Academic Article
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The structure of gramicidin A in dimethylsulfoxide/acetone.
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Academic Article
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Epitope of OSCP oligomycin sensitivity conferring protein exposed at the surface of the mitochondrial ATPase-ATPsynthase complex.
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Academic Article
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The effect of histone H1 on the compaction of oligonucleosomes. A quasielastic light scattering study.
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Academic Article
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Temperature and external electric field influence in membrane permeability of Babesia infected erythrocytes.
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Academic Article
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Differential nucleotide binding to catalytic and noncatalytic sites and related conformational changes involving alpha/beta-subunit interactions as monitored by sensitive intrinsic fluorescence in Schizosaccharomyces pombe mitochondrial F1.
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Academic Article
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Association states of tubulin in the presence and absence of microtubule-associated proteins. Analysis by electric birefringence.
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Academic Article
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Fine mapping of neutralization epitopes on duck hepatitis B virus (DHBV) pre-S protein using monoclonal antibodies and overlapping peptides.
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Academic Article
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Influence of histone H1 on chromatin structure.
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Academic Article
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Configurational distribution of denatured phosphoglycerate kinase.
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Academic Article
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Protein inclusion in lipid membranes: a theory based on the hypernetted chain integral equation.
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Academic Article
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Small-angle neutron scattering by a strongly denatured protein: analysis using random polymer theory.
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Academic Article
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Exploring the ion selectivity properties of a large number of simplified binding site models.
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Academic Article
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ANTHEPROT: a package for protein sequence analysis using a microcomputer.
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Academic Article
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Histone phosphorylation in native chromatin induces local structural changes as probed by electric birefringence.
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Academic Article
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Differences in the electric birefringence of spectrin dimers and tetramers as shown by the fast reversing electric pulse method.
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Academic Article
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Computer simulations of the flexibility of a series of synthetic cyclic peptide analogues.
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Academic Article
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Molecular dynamics study of calbindin D9k in the apo and singly and doubly calcium-loaded states.
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Academic Article
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p-Aminobenzoate synthesis in Escherichia coli: mutational analysis of three conserved amino acid residues of the amidotransferase PabA.
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Academic Article
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Structure and dynamics of bacteriorhodopsin. Comparison of simulation and experiment.
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Academic Article
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p-aminobenzoate synthesis in Escherichia coli: kinetic and mechanistic characterization of the amidotransferase PabA.
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Academic Article
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Phenol-containing adsorbents for the affinity chromatography purification of some NAD(H)-dependent dehydrogenases.
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Academic Article
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Role of metal ions on the secondary and quaternary structure of alkaline phosphatase from bovine intestinal mucosa.
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Academic Article
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Divergent signalling pathways regulate lipopolysaccharide-induced eRNA expression in human monocytic THP1 cells.
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Academic Article
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Dynamics transitions at the outer vestibule of the KcsA potassium channel during gating.
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Academic Article
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Virtual high-throughput ligand screening.
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Academic Article
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All-atom empirical potential for molecular modeling and dynamics studies of proteins.
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Academic Article
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Insertion of a glycosylphosphatidylinositol-anchored enzyme into liposomes.
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Academic Article
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A FTIR spectroscopy evidence of the interactions between wheat germ agglutinin and N-acetylglucosamine residues.
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Academic Article
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Mammalian GPI proteins: sorting, membrane residence and functions.
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Academic Article
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Nuclear proteins interacting with DNA and tubulin. Study of the interaction of the High Mobility Group protein 1 with tubulin.
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Academic Article
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Perspective on computational and structural aspects of kinase discovery from IPK2014.
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Academic Article
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Thermal and pH stabilities of alkaline phosphatase from bovine intestinal mucosa: a FTIR study.
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Academic Article
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Intermolecular interaction studies on native and enzyme-treated acid-soluble collagen.
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Academic Article
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Tubulin-chromatin interactions: evidence for tubulin-binding sites on chromatin and isolated oligonucleosomes.
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Academic Article
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Isolation and characterisation of five histone H1 subtypes from adult rat liver.
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Academic Article
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Phosphorylation- and ligand-induced conformational changes of rat liver fructose-1,6-bisphosphatase.
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Academic Article
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Inversion of the Side-Chain Stereochemistry of Indvidual Thr or Ile Residues in a Protein Molecule: Impact on the Folding, Stability, and Structure of the ShK Toxin.
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Academic Article
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Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field.
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Concept
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S100 Calcium Binding Protein G
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Grant
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Polarizable Force Field for Proteins and Lipids
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Grant
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Conformational Dynamics of Src-Kinases and Inhibition
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Grant
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High Performance Computer System for Molecular Modeling
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